Acoustics


Austringer09 Sep 2008 11:34 pm

There’s a study in the Journal of Comparative Psychology that comes somewhat up my alley.

Quick, Nicola J. and Vincent M. Janik. 2008. Whistle Rates of Wild Bottlenose Dolphins (Tursiops truncatus): Influences of Group Size and Behavior. J. Comp. Psych. 122(3):305-311.

OK, so what are the authors reporting as results? A lot of that is in the abstract:

In large social groups acoustic communication signals are prone to signal masking by conspecific sounds. Bottlenose dolphins (Tursiops truncatus) use highly distinctive signature whistles that counter masking effects. However, they can be found in very large groups where masking by conspecific sounds may become unavoidable. In this study we used passive acoustic localization to investigate how whistle rates of wild bottlenose dolphins change in relation to group size and behavioral context. We found that individual whistle rates decreased when group sizes got larger. Dolphins displayed higher whistle rates in contexts when group members were more dispersed as in socializing and in nonpolarized movement than during coordinated surface travel. Using acoustic localization showed that many whistles were produced by groups nearby and not by our focal group. Thus, previous studies based on single hydrophone recordings may have been overestimating whistle rates. Our results show that although bottlenose dolphins whistle more in social situations they also decrease vocal output in large groups where the potential for signal masking by other dolphin whistles increases.

I was right with them up to the part bolded in the above. Why am I not convinced that their paper delivers on what the abstract promises? Let’s have a look at the methods of the paper.

The distributed array consisted of three HTI–94–SSQ hydrophones and one HTI–96–MIN hydrophone (High Tech, Inc., Gulfport, MS) all with a frequency response of 2 Hz to 30 kHz +/- 1 dB, attached to tensioned 2m pieces of chain with waterproof tape. The four elements were then distributed around the boat in a box array to allow passive acoustic localization. Hydrophones were positioned at 2m depth and were placed between 160cm and 280cm apart. Recordings were made onto a Fostex D824 multitrack digital recorder (Fostex, Tokyo, Japan) during 2003 and an Alesis adat HD24 multitrack digital recorder (Alesis, Cumberland, RI) during 2004 (sampling frequency 48 kHz, 24 bit for the Fostex, 32 bit for the Alesis). Spoken tracks of the two observers, one detailing the surface behavior of the animals in the focal group and one the positions and behavior of nonfocal groups were also recorded on the multitrack recorder.

Anybody spot the trouble yet?

Sure you did.

First off, one simply isn’t going to get higher frequency response out of a system than that of the least capable component. Starting with the hydrophones, 30 kHz is near the top frequency one might be getting. There is the issue of roll-off, but generally there is pretty steep roll-off at the high end of a hydrophone frequency response curve. I didn’t find an accessible calibration curve for the Hi Tech hydrophones to find exactly what the roll-off would be. But even that is going to be truncated sharply by the recording gear. The Fostek D824 recorder is said in the methods to have a “sampling frequency [of] 48 kHz”, but that is ambiguous. One can report a sampling rate of, say, 48 kilosamples per second, or a Nyquist frequency of 24 kHz. The upshot is that the Fostek recording six channels, as stated in the methods, is capable of 48 kilosamples per second per channel, giving a Nyquist frequency of 24 kHz as the highest frequency that the recorder might manage to represent. So just from that, we know that no frequency data over 24 kHz was part of the set analyzed in this study. (We won’t go into the lack of specification of anti-alias filters in the equipment as it isn’t really relevant to my critique, but any serious acoustic analysis would need to take aliasing into account.)

Here’s something from the discussion…

In our study, whistle rates during socializing in groups of 6 to 10 animals was 0.53 whistles per minute per dolphin, for nonpolarized movement it was 0.27. Dolphins in Sarasota only whistled half as often in similar group sizes during these behavior patterns (Jones & Sayigh, 2002). In Wilmington, whistle rates during milling were the same as in Sarasota, but for socializing they were Increased whistle rates during socializing may be due to animals communicating information to social associates or using calls to maintain contact. According to our definition animals were socializing when they were within very close proximity, often rubbing body parts and touching (see definition in Table 1). Rates may be dependent on social bonds between the individuals present or may be a consequence of increased arousal due to contact with individuals and not be dependent on social relationships. Cook et al. (2004) showed higher signature whistle rates during socializing and suggest that this may function to maintain contact as other group members get more dispersed while individuals are engaged in socializing.

OK, this gets to the stuff that I just can’t handle. Remember that 24 kHz maximum possible frequency in the data set? (Due to practical considerations, it could be even lower.) Bottlenose dolphins have an upper hearing response over eight times as high as that. Bottlenose dolphins have peak frequencies in clicks over six times as high as that. The sweeping speculations about communication inherent in the abstract and the quote just above are made in complete ignorance of over 7/8ths of the acoustic sensitivity of the subject species, and over 5/6ths of the peak frequencies within the vocal repertoire of the species. We know that click-based sounds are used by dolphins in communication; the only experimental work on obligate acoustic communication between individual dolphins to perform a task revealed that the signals used by the subjects were click-based and not whistles. We know that recording lower frequencies does not necessarily secure any vestige of click-based vocalizations. There is absolutely no consideration in the study here given to any of those issues or the fact that click-based sounds could quite plausibly be used for some of the functions being discussed. In fact, the paper does not even contain the word “click” or the word “pulse”. As a result, the claim that dolphins “decrease vocal output” within this study is something that the authors cannot possibly support; they have no clue whatever what dolphin vocal output over 24 kHz might be. They can, at best, report that dolphins decrease whistle rates with increasing group size, but they need to leave the “vocal output” claim out of it, since there is so much more to bottlenose dolphin vocal output(*) than the puny amount of bandwidth that they actually measured.

Whistles do seem to have some importance in dolphin behavior and sociality. But just because whistles have traditionally been relatively simple to acquire by comparison to high frequency, broad bandwidth, narrow beam clicks does not mean that clicks in general or those higher frequencies can be ignored with impunity. Studies like the present one should make their speculations that take cognizance of this technological gap between what we humans can readily find out and what the dolphins are actually using.

(*) What to call dolphin sound emissions is a semantic issue. Personally, I don’t see the problem with “vocal” that some others do; the roots of the words were non-technical in the Latin, and one need not treat “vocal” as pertaining only to laryngeal sound production. Some offer “phonation” as an alternative, which so far as I can see simply grabs another non-technical Latin root that has as many issues and baggage from prior usage as the other. I went so far to avoid even getting into this terminological morass in my dissertation as to invent a neologism for emitted sound, and called them ensonds. For the purposes of this post, I’m simply accepting “vocal output” as sufficiently clear to move along with.

Austringer07 Jul 2008 06:10 am

Today, Nelson Alonso turned up on AtBC and turned in an amazing performance that has to be seen to be believed. Alonso is a long-time second-tier “intelligent design” creationism cheerleader; I’ve had experience in online discussions with him since the late 1990s. Some of his braggadocio touched upon having a long history of online discussion. I had a look back at the archives of the Calvin “evolution” email list, where I had some exchanges with Nelson. And I found one such discussion that had an end-point. It even has to do with “irreducible complexity”. I pointed out that the mammalian middle ear ossicular chain is an IC system providing an impedance-matching function, and that the impedance-matching goes away if you remove any of the parts. Nelson tried to deny that this qualified as IC, at least in part because the fossil record is clear that the system evolved. I’ll quote this last part of the exchange.

Nelson Alonso wrote:

[...]

NA>Wesley wrote:

I’m going to put it in one block here before moving on to
responding to Nelson’s post.

MI>People have given examples: The Krebs cycle and the human
MI>inner ear are IC systems (as defined by Behe and asserted by
MI>me) for which means of gradual evolution have been given.

It’s the impedance-matching function of the mammalian *middle*
ear that is proffered as an example. I saw someone today
saying that it is unnecessary to mammalian hearing. This
ignores the fact that every piece is absolutely necessary to
the impedance-matching function. That function goes away
(with about a 30 dB re 1 microbar decrease in sensitivity, or
about 1 / (2^10) the original sensitivity) if any of the parts
are removed. The human blood clotting system, one of Behe’s
examples of IC systems, is not *necessary* to circulation in
much the same way.

WRE>”It’s the impedance-matching function of the mammalian
WRE>*middle* ear that is proffered as an example. I saw
WRE>someone today saying that it is unnecessary to mammalian
WRE>hearing. This ignores the fact that every piece is
WRE>absolutely necessary to the impedance-matching function.

NA>This isn’t true, as I have stated above, one can remove the
NA>entire 3-bone system and I would still hear when pressure
NA>waves hit the oval window.

It is true. The impedance-matching function is lost if any of
the components is removed. As I develop below, there is a
characteristic and significant loss of sensitivity due to the
loss of the impedance-matching function.

My point was not that impedance-matching in the middle ear is
*necessary* to any amount of hearing, but rather that trying
to dismiss the impedance-matching function on the basis that
hearing itself is not completely eliminated is a digression.
One can simulate the loss of sensitivity involved in a gross
manner by donning a good pair of hearing protectors. Trying
to argue that the difference in sensitivity is not a
functional difference seems ludicrous to me.

I suggest that Nelson pick up any good basic text on
audiometry, which will explain about impedance mismatches
going from pressure changes in air to movement of the oval
window.

WRE>That [impedance-matching] function goes away (with about a
WRE>30 dB re 1 microbar decrease in sensitivity, or about
WRE>1 / (2^10) the original sensitivity) if any of the parts
WRE>are removed.

NA>Mere observation can tell us this is false, the one-bone
NA>system of reptiles make them hear quite well.

No, actual experimentation has shown this characteristic loss
of sensitivity in terrestrial mammals to be the case. The
topic of discussion is the function of impedance-matching in
the mammalian middle ear. Normal hearing in another taxon is
not responsive to the point. But Nelson’s digression to
reptilian systems does him no favors. When the middle ear of
lizards is removed, their hearing likewise decreases by 35 to
57 dB in sensitivity, showing the importance of
impedance-matching to acute hearing even outside mammalian
species. See
http ://www.glue.umd.edu/~carr/Hearing/lecture4.html.
Also, Nelson’s digression shoots him in the foot on another
point, which is that such systems help establish the utility
of simpler systems in accomplishing the same function, which
is a point in favor of evolutionary development of the IC
impedance-matching function of the terrestrial mammalian
middle ear.

I’m a co-author on research that looked at hearing sensitivity
in white whales. Part of that paper discusses the loss of
impedance-matching reported by others in terrestrial mammals
placed in hyperbaric chambers. (You don’t have to use surgery
to reduce the efficacy of the middle ear’s
impedance-matching.)

Sam Ridgway, Donald Carder, Rob Smith, Tricia Kamolnick, and
Wesley Elsberry. 1997. First audiogram for marine mammals in
the open ocean and at depth: Hearing and whistling by two
white whales down to 30 atmospheres. The Journal of the
Acoustical Society of America Volume 101, Issue 5, p. 3136.

WRE>The human blood clotting system, one of Behe’s examples of
WRE>IC systems, is not *necessary* to circulation in much the
WRE>same way.”

NA>Why can’t any one anti-IDist be specific?

What, specifically, does Nelson think is vague about the
statement above? Human circulation occurs even if there is a
problem with the human blood clotting system. Terrestrial
mammalian hearing occurs, at reduced sensitivity, if the
impedance-matching function of the middle ear is compromised.
Trying to dismiss the impedance-matching function of the
mammalian middle ear on the grounds that hearing is not
entirely lost if it is interrupted should likewise cause ID
proponents to reject the example of the human blood clotting
system, which if interrupted does not mean that all
circulation stops.

[...]

Here’s some of what I’ve written on the topic before.

[Quote]

By irreducibly complex I mean a single system composed
of several well-matched, interacting parts that contribute to
the basic function, wherein the removal of any one of the
parts causes the system to effectively cease functioning.

[End Quote - MJ Behe, Darwin's Black Box, p.39]

The mammalian middle ear has on one side the tympanum, which
demarcates between middle and outer ear, and on the other the
oval window of the cochlea. In between the two are three
small bones, the malleus, incus, and stapes. These small
bones are articulated in series. What the system of tympanum,
malleus, incus, stapes, and oval window accomplish as a
function is the conversion of high-volume, low pressure
movements of sound in air at the tympanum into low-volume,
high-pressure movements of the oval window and thus the fluid
contents of the cochlea. In tech terms, the system is an
impedance-matching mechanism.

If any component of the system is removed, the
impedance-matching properties of the system go away, and
hearing thresholds are reduced by about 30 dB. With this
system in place, though, hearing can be quite sensitive.

This system appears to make a good match for Behe’s definition
of irreducible complexity. One might wonder why Behe doesn’t
use this instead of mousetraps. Well, one reason is that
there is a fossil record showing forms intermediate between
the reptilian ancestral condition and the mammalian anatomy,
and irreducible complexity doesn’t look so spiffy a concept if
one has to say that IC excludes evolutionary explanation,
except for this case that has been documented as having an
evolutionary explanation.

Wesley

Austringer01 May 2008 05:20 am

Warning buoys for right whales installed along Massachusetts Bay

Chris Clarke and the Ornithology Lab at Cornell University have an application for bioacoustics: right whale detection in shipping lanes. Right whales often make contact calls, called “up-calls”, and a series of ten deployed buoys with hydrophones and communications gear can pick up these calls for right whales within five miles of a listening buoy. Onboard processing does a first pass at picking out a “top ten” list of possible right whale calls, and those are uploaded to the Cornell Ornithology Lab for further processing. The system is computer-assisted rather than computer-automated, meaning that the computer processing narrows the things that would require a human decision, but it relies upon humans to make a final determination of whether a right whale call was present. If that is the case, the buoy is marked as having one or more right whales in the vicinity, and is tagged as having an “alert” status. This is reflected on a website that ship captains can access and, hopefully, reduce their speed while traversing areas where right whales have been detected. Right whales move slowly, travel near the surface, and ship strikes remain a major source of mortality for right whales. By highlighting where right whales are, Clarke hopes that responsible captains will take steps to reduce ship speed and post lookouts.

Austringer11 Feb 2008 05:01 am

M-Audio has updated its handheld Microtrack solid-state recorder to the Microtrack II. The specs are attractive. It records in stereo to Compact Flash or MicroDisk format cards, in either WAV or MP3 formats. It can record at up to 96 kilosamples/second at 24 bits per sample. It has both 1/4″ and 1/8″ microphone/line inputs, and can provide 48V phantom power to microphones. Interfacing this unit to hydrophones should be a piece of cake. NCSE has one of the M-Audio Microtrack recorders for making high-quality podcasts or audio documents.

Back in 2005, Diane and I had to come up with a programmable field recorder on three weeks notice. We went with a PDA-based solution using Core Audio’s Compact Flash format audio input card, coupled with Core Audio’s microphone pre-amp/digitizer system. If you need progammability, as for making unattended scheduled acoustic sampling, that’s still a good solution. On the other hand, for interactive recording, the M-Audio Microtrack II offers the convenience of a smaller, discrete package to use, plus you only have to worry about one power supply. The M-Audio unit is about the same size as a standard PDA, though a bit thicker. Core Audio does sell the MicroTrack II, and sees it as aimed at a different market segment than their PDAudio system.

As with any pro-quality system, though, it is pricey. The MSRP on the Microtrack II is about $500. Sweetwater is advertising them at about $300. As such, it is out of range of our budget at the moment. That’s not a whole lot more than one might pay for a top-end media player these days, though, and I can always hope for a price drop.






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